VCFSTREAMSORT(1) vcfstreamsort (VCF transformation) VCFSTREAMSORT(1)

vcfstreamsort

vcfstreamsort options [vcf file]

Sorts the input (either stdin or file) using a streaming sort algorithm. Guarantees that the positional order is correct provided out-of-order variants are no more than 100 positions in the VCF file apart.

options:
    -h, --help             this dialog
    -w, --window N         number of sites to sort (default 10000)
    -a, --all              load all sites and then sort in memory
Type: transformation

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vcflib(1)

Copyright 2011-2023 (C) Erik Garrison and vcflib contributors. MIT licensed.

Erik Garrison and vcflib contributors.

vcfstreamsort (vcflib)