NAME

vcf2dag

SYNOPSIS

vcf2dag options []

DESCRIPTION

Modify VCF to be able to build a directed acyclic graph (DAG)

OPTIONS

options:
    -r, --reference FILE         FASTA reference file.
Modify the VCF file so that homozygous regions are included as REF/. calls.
For each ref and alt allele, assign an index.  These steps are sufficient to
enable use of the VCF as a DAG (specifically a partially-ordered graph).
Type: transformation
    

EXIT VALUES

0

Success

not 0

Failure

SEE ALSO

vcflib(1)

OTHER

LICENSE

Copyright 2011-2023 (C) Erik Garrison and vcflib contributors. MIT licensed.

AUTHORS

Erik Garrison and vcflib contributors.