trees-distances - Compute autocorrelations or other
functions of tree distances.
trees-distances analysis trees-file1 [trees-file2
...]
Compute autocorrelations or other functions of tree distances.
- –analysis arg (=matrix)
- Analysis: matrix, autocorrelation, diameter, compare, convergence,
converged.
- –metric arg (=topology)
- Tree distance: topology, branch, internal-branch.
- –remove-duplicates
- [matrix]: disallow zero distances between points.
- –max-lag arg
- [autocorrelation]: max lag to consider.
- –CI arg (=0.95)
- Confidence interval size.
- –converged arg (=0.05)
- Comma-separated quantiles of distance required for converged? (smaller is
more strict).
- –mean
- Show mean and standard deviation
- –median
- Show median and confidence interval
- –minmax
- Show minimum and maximum distances
- –leaves-only
- Show minimum and maximum distances
- –topology-only
- Show minimum and maximum distances
- –jitter arg
- Amount of noise to add to distances
BAli-Phy online help:
<http://www.bali-phy.org/docs.php>.
Please send bug reports to
<bali-phy-users@googlegroups.com>.