tree-mean-lengths - Compute the mean lengths for branches
in the given topology.
tree-mean-lengths [OPTIONS] tree file1
[file2 ...]
Compute the mean lengths for branches in the given topology.
- -h,
–help
- produce help message
- -T arg,
–tree arg
- tree to re-root
- –files arg
- tree samples to examine
- -s arg (=0),
–skip arg (=0)
- number of tree samples to skip
- -u arg,
–until arg
- Read until this number of trees.
- –ignore arg
- Comma-separated taxa to remove
- –simple
- Ignore all branches not in the query tree
- -x arg (=1),
–subsample arg (=1)
- factor by which to sub-sample
- –var
- report standard deviation of branch lengths instead of mean
- –no-node-lengths
- ignore branches not in the specified topology
- –safe
- Don’t die if no trees match the topology
- –show-node-lengths
- Output special format
- -V,
–verbose
- Output more log messages on stderr.
BAli-Phy online help:
<http://www.bali-phy.org/docs.php>.
Please send bug reports to
<bali-phy-users@googlegroups.com>.