transformseq - convert multiple sequence alignments from one
format to another
transformseq [options] < sequence_data.fa >
sequence_logo.eps
- A tool for converting multiple sequence alignments from one format to
another.
- --version
- show program's version number and exit
- -h --help
- show this help message and exit
- Input/Output Options:
- -f --fin
FILENAME
- Sequence input file (default: stdin)
- --format-in
FORMAT
- Multiple sequence alignment format: (clustal, fasta, plain, msf, genbank,
nbrf, nexus, phylip, stockholm, intelligenetics, table, array)
- -o --fout
FILENAME
- Output file (default: stdout)
- -F --format-out
FORMAT
- Multiple sequence alignment output format: (clustal, fasta, plain,
intelligenetics, table, array) (Default: fasta)
- Transformations:
- --seg
- Mask low complexity regions in protein sequences.
- --subsample
FRACTION
- Return a random subsample of the sequences.
- --reverse
- reverse sequences
- --complement
- complement DNA sequences