TFF_VISUALIZE_OVERLAP.PY(1)

User Commands

TFF_VISUALIZE_OVERLAP.PY(1)

NAME

tff_visualize_overlap.py - display a tractogram and its density map

DESCRIPTION

usage: tff_visualize_overlap.py [-h] [--remove_invalid]

: IN_TRACTOGRAM reference

Display a tractogram and its density map (computed from Dipy) in rasmm, voxmm and vox space with its bounding box.

positional arguments:

IN_TRACTOGRAM: Tractogram filename. Format must be one of trk, tck, vtk, fib, dpy, trx.
reference: Reference anatomy for tck/vtk/fib/dpy file support (nii or nii.gz).

options:

-h, --help: show this help message and exit
--remove_invalid: Removes invalid streamlines to avoid the density_mapfunction to crash.

January 2024

tff_visualize_overlap.py 0.2.9