TFF_CONVERT_DSI_STUDIO.PY(1) User Commands TFF_CONVERT_DSI_STUDIO.PY(1)

tff_convert_dsi_studio.py - fix DSI-Studio TRK file

usage: tff_convert_dsi_studio.py [-h] [--remove_invalid | --keep_invalid] [-f]

IN_DSI_TRACTOGRAM IN_DSI_FA OUT_TRACTOGRAM

This script is made to fix DSI-Studio TRK file (unknown space/convention) to make it compatible with TrackVis, MI-Brain, Dipy Horizon (Stateful Tractogram).

The script either make it match with an anatomy from DSI-Studio.

This script was tested on various datasets and worked on all of them. However, always verify the results and if a specific case does not work. Open an issue on the Scilpy GitHub repository.

WARNING: This script is still experimental, DSI-Studio evolves quickly and results may vary depending on the data itself as well as DSI-studio version.

Path of the input tractogram file from DSI studio (.trk).
Path of the input FA from DSI Studio (.nii.gz).
Path of the output tractogram file.

show this help message and exit
Remove the streamlines landing out of the bounding box.
Keep the streamlines landing out of the bounding box.
Force overwriting of the output files.
January 2024 tff_convert_dsi_studio.py 0.2.9