QUAL_TRIM.PY(1) User Commands QUAL_TRIM.PY(1)

qual_trim.py - Perform quality trimming for single-end reads.

usage: qual_trim.py [-h] [-b BASE] [-p PROB] [-q SCORE] [-l BP] [--illumina5]

[--solexa]
FASTQ

Perform quality trimming for single-end reads.

including stdin or compressed file {zip,gz,tar,bz}

show this help message and exit
ASCII-encoded quality offset, e.g. 33 or 64 (default: 33)
error probability cutoff (default: 0.1)
quality score cutoff (default: '-p 0.1')
minimum read length in bp (default: 16)
Illumina 1.5+ encoding marked with 'B'
Solexa encoding


This manpage was written by Andreas Tille for the Debian distribution and
can be used for any other usage of the program.

March 2020 qual_trim.py 1.1