NAME

pxs2phy - convert seqfiles from nexus, phylip, or fastq to phylip

SYNOPSIS

pxs2phy [OPTIONS]...

DESCRIPTION

Convert seqfiles from nexus, phylip, or fastq to phylip. Can read from STDIN or file.

-s, --seqf=FILE: input sequence file, STDIN otherwise
-u, --uppercase: export characters in uppercase
-o, --outf=FILE: output sequence file, STOUT otherwise
-h, --help: display this help and exit
-V, --version: display version and exit
-C, --citation: display phyx citation and exit

CITATION

Brown, Joseph W., Joseph F. Walker, and Stephen A. Smith. 2017. Phyx: phylogenetic tools for unix. Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.

AUTHOR

Written by Stephen A. Smith (blackrim), Joseph W. Brown

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