NAME

pxbdfit - fit lineage diversification model to a tree

SYNOPSIS

pxbdfit [OPTIONS]...

DESCRIPTION

Fit a lineage diversification model to a tree. This will take a newick- or nexus-formatted tree from a file or STDIN.

OPTIONS

-t, --treef=FILE: input treefile, STDIN otherwise
-m, --model=STRING: diversification model. either 'yule', 'bd' (default), or 'best'
-o, --outf=FILE: output file, STOUT otherwise
-h, --help: display this help and exit
-V, --version: display version and exit
-C, --citation: display phyx citation and exit

CITATION

Brown, Joseph W., Joseph F. Walker, and Stephen A. Smith. 2017. Phyx: phylogenetic tools for unix. Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.

AUTHOR

Written by Joseph W. Brown

REPORTING BUGS

Report bugs to: <https://github.com/FePhyFoFum/phyx/issues> phyx home page: <https://github.com/FePhyFoFum/phyx>