| POPT(1) | Perl | POPT(1) |
popt - extract Michael Zuker's p-optimal folds from subopt output.
RNAsubopt -s < seq | popt
This program extracts Michael Zuker's p-optimal folds from subopt output. prints p-optimal structures followed by the list of pairs with respect to which they are optimal. Input must be sorted by energy!
In conection with RNAfold it can be used as
RNAfold < sequence_file | b2ct > ct_file.ct
RNAsubopt(1)
Ivo L. Hofacker <ivo@tbi.univie.ac.at>, Walter Fontana
perl v5.10.1 2011-02-01
| User | Contributed |