NAME

nps2gps - convert nucleotide-protein sets to ASN.1 genomic product sets

SYNOPSIS

nps2gps [-] [-B] [-D] [-F] [-G str] [-L] [-N] [-P] [-Q] [-R] [-S] [-T] [-U] [-f str] [-i filename] [-o filename] [-p path] [-r path] [-x str]

DESCRIPTION

nps2gps converts NCBI Bioseq-sets from simple nucleotide-protein sets to full genomic product sets complete with mRNA transcripts, which it outputs as text ASN.1.

OPTIONS

A summary of options is included below.

-

Print usage message

-B

NG and NR rRNA

-D

RefSeq mRNA Titles

-F

Map by Feature ID

-G str

General ID database name

-L

Lock components in advance

-N

Promote Non-coding RNAs

-P

mRNA ID from Protein

-Q

Special mRNA titles

-R

Enable Remote fetching from ID

-S

Special ncRNA on preRNA

-T

Map by Transcript ID

-U

Remove Unnecessary gene cross-references

-f str

Substring filter

-i filename

Single input file (default = stdin)

-o filename

Single output file (default = stdout)

-p path

Path to files for batch conversion

-r path

Path for results of batch conversion

-x str

File selection suffix for batch conversion (default = .ent)

AUTHOR

The National Center for Biotechnology Information.

SEE ALSO

asn2asn(1), asn2ff(1), asn2gb(1), asn2xml(1), asndhuff(1).