tree-mean-lengths - Compute the mean lengths for branches
in the given topology.
tree-mean-lengths tree-file < in-file
Compute the mean lengths for branches in the given topology.
- -h,
–help
- produce help message
- –tree arg
- tree to re-root
- -s arg (=0),
–skip arg (=0)
- number of tree samples to skip
- -u arg,
–until arg
- Read until this number of trees.
- –prune arg
- Comma-separated taxa to remove
- -x arg (=1),
–subsample arg (=1)
- factor by which to subsample
- –var
- report standard deviation of branch lengths instead of mean
- –no-node-lengths
- ignore branches not in the specified topology
- –safe
- Don’t die if no trees match the topology
- –drop-partial
- Remove partial branches
- –seed arg
- random seed
- -V,
–verbose
- Output more log messages on stderr.
BAli-Phy online help:
<http://www.bali-phy.org/docs.php>.
Please send bug reports to
<bali-phy-users@googlegroups.com>.