graphdump - build the compacted de Bruijn graph from many complete
genomes
USAGE:
- graphdump
- -k <integer> [-s <>] ... -f
<seq|group|dot|gfa1|gfa2|fasta> [--prefix] [--] [--version] [-h]
<file name>
Where:
-k <integer>, --kvalue <integer>
- (required)
- Value of k
- -s <>, --seqfile
<>
- (accepted multiple times)
- sequences file name
-f <seq|group|dot|gfa1|gfa2|fasta>,
--format <seq|group|dot|gfa1|gfa2
- |fasta>
- (required)
- Output format
--prefix
- Add a prefix to segments in GFA (in case if you have genomes with
identical FASTA headers)
--, --ignore_rest
- Ignores the rest of the labeled arguments following this flag.
--version
- Displays version information and exits.
-h, --help
- Displays usage information and exits.
- <file name>
- (required)
- input file name
- This utility converts the binary output of TwoPaCo to another format
This manpage was written by Andrius Merkys for the Debian
distribution and
can be used for any other usage of the program.