draw-tree - Draw NEWICK (and some other) formatted
files.
draw-tree [OPTIONS] tree file
Draw NEWICK (and some other) formatted files.
- -h,
–help
- Produce help message
- -W arg (=8.5),
–width arg (=8.5)
- Page width in inches
- -H arg (=11),
–height arg (=11)
- Page height in inches
- –file arg
- predicates to examine
- –output arg (=pdf)
- Type of output to write: tree, topology, mtree, lengths, dot, ps, pdf,
svg
- –out arg
- Output filename (without extension)
- –full
- Consider only full splits by collapsing any partial splits.
- –iterations arg (=2)
- Number of iterations for layout algorithm
- –font-size arg (=10)
- Font size for taxon names
- –angle_iterations arg (=0)
- Number of iterations for layout algorithm with small-angle penalties
- –labels arg (=horizontal)
- Are the names horizontal or angled?
- –collapse
- Give node lengths evenly to neighboring branches and zero the node
lengths.
- –layout arg (=graph)
- Layout method: graph, equal-angle, equal-daylight, etc.
- –greedy
- For equal-daylight layout: take as much daylight as possible?
- –tree-layout-initial
- Start an energy layout with positions from the equal-angle layout - only
for multifurcating trees
- –no-shade
- For equal-daylight layout: reject rotations that shade other groups?
- –draw-clouds arg
- Draw wandering-ranges in MC trees as clouds.
- –seed arg
- Random seed
- –verbose
- Output more log messages on stderr.
BAli-Phy online help:
<http://www.bali-phy.org/docs.php>.
Please send bug reports to
<bali-phy-users@googlegroups.com>.