COVELS-SE(1) User Commands COVELS-SE(1)

covels-SE - detection of transfer RNA genes in genomic sequence

covels [-options] <CM file> <seqfile>

covels - scan sequences for matches to an RNA covariance model

version 2.4.4 (January 1996)

: do complementary strand too

-g <fracGC> : set background expected GC content (0.5 default)

: print short help and version info
: save hits in <file>

-t <thresh> : set score reporting threshold

-w <window> : set scanning window size

CRASH PROTECTION OPTIONS:

-D <filename> : save name of last sequence processed

EXPERIMENTAL OPTIONS:
: set epsilon for fast search
: fast heuristic search


This manpage was written by Nilesh Patra for the Debian distribution and
can be used for any other usage of the program.

July 2021 covels-SE 2.0.9+ds