CNVKIT_TARGET(1) User Commands CNVKIT_TARGET(1)

cnvkit_target - Transform bait intervals into targets more suitable for CNVkit.

usage: cnvkit.py target [-h] [--annotate ANNOTATE] [--short-names] [--split]

[-a AVG_SIZE] [-o FILENAME]
interval

BED or interval file listing the targeted regions.

show this help message and exit
Use gene models from this file to assign names to the target regions. Format: UCSC refFlat.txt or ensFlat.txt file (preferred), or BED, interval list, GFF, or similar.
Reduce multi-accession bait labels to be short and consistent.
Split large tiled intervals into smaller, consecutive targets.
Average size of split target bins (results are approximate). [Default: 266.6666666666667]
Output file name.
July 2023 cnvkit.py target 0.9.10