NAME

cnvkit_sex - Guess samples' sex from the relative coverage of chromosomes X and Y.

DESCRIPTION

usage: cnvkit.py sex [-h] [-y] [-o FILENAME] filenames [filenames ...]

positional arguments:

filenames

Copy number or copy ratio files (*.cnn, *.cnr).

options:

-h, --help

show this help message and exit

-y, --male-reference, --haploid-x-reference

Assume inputs were normalized to a male reference (i.e. female samples will have +1 log-coverage of chrX; otherwise male samples would have -1 chrX).

-o FILENAME, --output FILENAME

Output table file name.