CNVKIT_IMPORT-THETA(1)

User Commands

CNVKIT_IMPORT-THETA(1)

NAME

cnvkit_import-theta - Convert THetA output to a BED-like, CNVkit-like tabular format.

Equivalently, use the THetA results file to convert CNVkit .cns segments to
integer copy number calls.

DESCRIPTION

usage: cnvkit.py import-theta [-h] [--ploidy PLOIDY] [-d DIRECTORY]

: tumor_cns theta_results

positional arguments:

: tumor_cns theta_results

options:

-h, --help: show this help message and exit
--ploidy PLOIDY: Ploidy of normal cells. [Default: 2]
-d DIRECTORY, --output-dir DIRECTORY: Output directory name.

July 2023

cnvkit.py import-theta 0.9.10