CNVKIT_IMPORT-SEG(1) User Commands CNVKIT_IMPORT-SEG(1)

cnvkit_import-seg - Convert a SEG file to CNVkit .cns files.

usage: cnvkit.py import-seg [-h] [-c CHROMOSOMES] [-p PREFIX] [--from-log10]

[-d DIRECTORY]
segfile

Input file in SEG format. May contain multiple samples.

show this help message and exit
Mapping of chromosome indexes to names. Syntax: "from1:to1,from2:to2". Or use "human" for the preset: "23:X,24:Y,25:M".
Prefix to add to chromosome names (e.g 'chr' to rename '8' in the SEG file to 'chr8' in the output).
Convert base-10 logarithm values in the input to base-2 logs.
Output directory name.
July 2023 cnvkit.py import-seg 0.9.10