CNVKIT_BINTEST(1) User Commands CNVKIT_BINTEST(1)

cnvkit_bintest - Test for single-bin copy number alterations.

usage: cnvkit.py bintest [-h] [-s FILENAME] [-a ALPHA] [-t] [-o OUTPUT]

cnarray

Bin-level log2 ratios (.cnr file), as produced by 'fix'.

show this help message and exit
Segmentation calls (.cns), the output of the 'segment' command).
Significance threhold. [Default: 0.005]
Test target bins only; ignore off-target bins.
Output filename.
July 2023 cnvkit.py bintest 0.9.10