NAME

cnvkit_antitarget - Derive off-target ("antitarget") bins from target regions.

DESCRIPTION

usage: cnvkit.py antitarget [-h] [-g FILENAME] [-a AVG_SIZE] [-m MIN_SIZE]

-h, --help: show this help message and exit
-g FILENAME, --access FILENAME: Regions of accessible sequence on chromosomes (.bed), as output by genome2access.py.
-a AVG_SIZE, --avg-size AVG_SIZE: Average size of antitarget bins (results are approximate). [Default: 150000]
-m MIN_SIZE, --min-size MIN_SIZE: Minimum size of antitarget bins (smaller regions are dropped). [Default: 1/16 avg size, calculated]
-o FILENAME, --output FILENAME: Output file name.