CDKDEPICT(1) User Commands CDKDEPICT(1)

cdkdepict - draw SVG image for SMILES

Depict molecules given as SMILES strings in SVG, PDF PS (PostScript) or EPS (Encapsulated PS) formats.

USAGE

cdkdepict < input.smi cdkdepict inputs*.smi

-a, --auto-kekulise

Attempt to "kekulise" aromatic smiles, switch to non-kekulised representation if kekulisation fails (default)

-k, --kekulise

Always "kekulise" aromatic smiles

-k-, --dont-kekulise, --do-not-kekulise

Do not "kekulise" aromatic smiles, leave input as it is

--smiles c1ccccc1

Specify SMILES string to depict instead of reading input files

-S, --svg-output Produce SVG output

-E, --eps-output Produce EPS output

-P, --pdf-output Produce PDF output

--supported-formats

List formats supported for a given input
Print program version and exit
Print short help message (this message) and exit
July 2023 cdkdepict version 0.2.0