cathparse - Generates DCF file from raw CATH files.
cathparse -listfile infile
-domfile infile
-namesfile infile
-outfile outfile
-logfile outfile
cathparse -help
cathparse is a command line program from EMBOSS
(“the European Molecular Biology Open Software Suite”). It is
part of the "Utils:Database creation" command group(s).
-listfile infile
This option specifies the name of raw CATH classification
file (caths.list.vX.X) (input). The raw CATH parsable files (classification
and description files) available from ftp.biochem.ucl.ac.uk
(/pub/cathdata/v2.4). Default value: caths.list.v2.4
-domfile infile
This option specifies the name of raw CATH classification
file (domlist.vX.X) (input). The raw CATH parsable files (classification and
description files) available from ftp.biochem.ucl.ac.uk (/pub/cathdata/v2.4).
Default value: domlist.v2.4
-namesfile infile
This option specifies the name of raw CATH classification
file (CAT.names.all.vX.X) (input). The raw CATH parsable files (classification
and description files) available from ftp.biochem.ucl.ac.uk
(/pub/cathdata/v2.4). Default value: CAT.names.all.v2.4
-outfile outfile
This option specifies the name of CATH DCF file (domain
classification file) (output). A 'domain classification file' contains
classification and other data for domains from SCOP or CATH, in DCF format
(EMBL-like). The files are generated by using SCOPPARSE and CATHPARSE. Domain
sequence information can be added to the file by using DOMAINSEQS. Default
value: Ecath.dat
-logfile outfile
This option specifies the name of the CATHPARSE log file.
Default value: cathparse.log
Bugs can be reported to the Debian Bug Tracking system
(http://bugs.debian.org/emboss), or directly to the EMBOSS developers
(http://sourceforge.net/tracker/?group_id=93650&atid=605031).
cathparse is fully documented via the tfm(1) system.
Debian Med Packaging Team
<debian-med-packaging@lists.alioth.debian.org>
Wrote the script used to autogenerate this manual
page.
This manual page was autogenerated from an Ajax Control Definition
of the EMBOSS package. It can be redistributed under the same terms as
EMBOSS itself.