NAME

pxboot - sequence alignment bootstrap or jackknife resampling

SYNOPSIS

pxboot [OPTIONS]...

DESCRIPTION

Sequence alignment bootstrap or jackknife resampling. This will take fasta, fastq, phylip, and nexus formats from a file or STDIN. Results are written in fasta format.

OPTIONS

-s, --seqf=FILE: input sequence file, STDIN otherwise
-p, --partf=FILE: file listing empirical partitions: NAME = START-STOP[\INTERVAL]
-f, --frac=DOUBLE: jackknife percentage, default bootstrap (i.e. -f 1.0)
-x, --seed=INT: random number seed, clock otherwise
-o, --outf=FILE: output sequence file, STOUT otherwise
-h, --help: display this help and exit
-V, --version: display version and exit
-C, --citation: display phyx citation and exit

CITATION

Brown, Joseph W., Joseph F. Walker, and Stephen A. Smith. 2017. Phyx: phylogenetic tools for unix. Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.

AUTHOR

Written by Joseph W. Brown

REPORTING BUGS

Report bugs to: <https://github.com/FePhyFoFum/phyx/issues> phyx home page: <https://github.com/FePhyFoFum/phyx>