NEEDLE-ESTIMATE(1) NEEDLE-ESTIMATE(1)

needle-estimate - Estimate expression value of transcript based on the Needle index.

Please provide a sequence file.

Prints the help page.
Prints the help page including advanced options.
Prints the version information.
Prints the copyright/license information.
Export the help page information. Value must be one of [html, man].
Directory where input files can be found. Default: "./".
Directory, where output files should be saved. Default: "expressions.out".
Number of threads to use. Default: 1. Default: 1.
Set, if normalization is wanted. Normalization is achieved bydividing the expression value with the expression threshold of the first ibf. Only make sense if every bin has its own expression thresholds (which is the case if expression thresholds were generated automatically).Default: False.

Last update: 2024-11-07
needle-estimate version: 1.0.3
SeqAn version: 3.3.0

https://github.com/seqan/needle

needle-estimate Copyright: BSD 3-Clause License
Author: Mitra Darvish
SeqAn Copyright: 2006-2023 Knut Reinert, FU-Berlin; released under the 3-clause BSDL.
In your academic works please cite: Needle: a fast and space-efficient prefilter for estimating the quantification of very large collections of expression experiments; Mitra Darvish, Enrico Seiler, Svenja Mehringer, René Rahn, and Knut Reinert; Bioinformatics, Volume 38, Issue 17, 1 September 2022, Pages 4100-4108. doi: https://doi.org/10.1093/bioinformatics/btac492
For full copyright and/or warranty information see --copyright.

2024-11-07 needle-estimate 1.0.3