COMMAND:

antsMotionCorrStats

antsMotionCorrStats - create summary measures of the parameters that are output by antsMotionCorr. Currently only works for linear transforms. Outputs the mean and max displacements for the voxels within a provided mask, at each time point. By default the displacements are relative to the reference space, but the framewise option may be used to provide displacements between consecutive time points

OPTIONS:

-x, --mask mask.nii.gz

Mask image - compute displacements within mask.

-m, --moco MOCOparams.csv

motion correction parameters from antsMotionCorr.

-o, --output corrected.csv

Specify the output file

-t, --transform

Specify the index for a 3D transform to output

-f, --framewise

do framewise summarywise stats <VALUES>: 0

-s, --spatial-map

output image of displacement magnitude

-d, --timeseries-displacement

output 4d time-series image of displacement magnitude

-h

Print the help menu (short version). <VALUES>: 0

--help

Print the help menu. <VALUES>: 1, 0