antsAlignOrigin - part of ANTS registration suite
- antsAlignOrigin
- antsAlignOrigin, applied to an input image, transforms it according to a
reference image and a transform (or a set of transforms).
-d, --dimensionality 2/3
- This option forces the image to be treated as a specified-dimensional
image. If not specified, antsWarp tries to infer the dimensionality from
the input image.
-i, --input inputFileName
- Currently, the only input objects supported are image objects. However,
the current framework allows for warping of other objects such as meshes
and point sets.
-r, --reference-image imageFileName
- For warping input images, the reference image defines the spacing, origin,
size, and direction of the output warped image.
-o, --output warpedOutputFileName
- [transform,alignedImage]
- One can either output the warped image or, if the boolean is set, one can
print out the displacement field based on thecomposite transform and the
reference image.
-h
- Print the help menu (short version). <VALUES>: 0
--help
- Print the help menu. <VALUES>: 1, 0