NAME

ANTSJacobian - part of ANTS registration suite

SYNOPSIS

ANTSJacobian ImageDim gWarp outfile uselog maskfn normbytotalbool projectionvector

DESCRIPTION

WARNING! ANTSJacobian may not be working correctly, see CreateJacobianDeterminantImage for an alternative method

for example ANTSJacobian 3 myWarp.nii Output 1 templatebrainmask.nii 1 1x0 the last 1 normalizes the jacobian by the total in the mask. use this to adjust for head size. 1x0 will project the warp along direction 1,0 --- don't add this option if you don't want to do this